modules/wipertools_fastqgather

A tool of the wipertools suite that merges FASTQ chunks produced by wipertools_fastqscatter

fastqmergeunion

https://github.com/nf-core/modules/[...]/modules/nf-core/wipertools/fastqgather

Description

A tool of the wipertools suite that merges FASTQ chunks produced by wipertools_fastqscatter

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’ ]

`fastq`
`:file`

List of FASTQ chunk files to be merged

*.{fastq,fastq.gz}

Output

name:type

description

pattern

`gathered_fastq`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’ ]

`${prefix}.fastq.gz`
`:file`

The resulting FASTQ file

*.fastq.gz

`versions_wipertools`

`${task.process}`
`:string`

The name of the process

`wipertools`
`:string`

The name of the tool

`wipertools fastqgather --version`
`:eval`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`wipertools`
`:string`

The name of the tool

`wipertools fastqgather --version`
`:eval`

The expression to obtain the version of the tool

Tools

fastqgather
GPL v2-or-later

A tool of the wipertools suite that merges FASTQ chunks produced by wipertools_fastqscatter.

args_id: $args

github.com/mazzalab/fastqwiperno DOI available

modules/wipertools_fastqgather

Description

Input

`meta`
`:map`

`fastq`
`:file`

Output

`gathered_fastq`

`meta`
`:map`

`${prefix}.fastq.gz`
`:file`

`versions_wipertools`

`${task.process}`
`:string`

`wipertools`
`:string`

`wipertools fastqgather --version`
`:eval`

Topics

`versions`

`${task.process}`
`:string`

`wipertools`
`:string`

`wipertools fastqgather --version`
`:eval`

Tools

fastqgather
GPL v2-or-later

included in

maintainers

get in touch

modules/wipertools_fastqgather

Description

Input

meta :map

fastq :file

Output

gathered_fastq

meta :map

${prefix}.fastq.gz :file

versions_wipertools

${task.process} :string

wipertools :string

wipertools fastqgather --version :eval

Topics

versions

${task.process} :string

wipertools :string

wipertools fastqgather --version :eval

Tools

fastqgatherGPL v2-or-later

included in

maintainers

get in touch

`meta`
`:map`

`fastq`
`:file`

`gathered_fastq`

`meta`
`:map`

`${prefix}.fastq.gz`
`:file`

`versions_wipertools`

`${task.process}`
`:string`

`wipertools`
`:string`

`wipertools fastqgather --version`
`:eval`

`versions`

`${task.process}`
`:string`

`wipertools`
`:string`

`wipertools fastqgather --version`
`:eval`

fastqgather
GPL v2-or-later