mirtop export generates files such as fasta, vcf or compatible with isomiRs bioconductor package
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
mirtop_gff
:file
GFF file
*.{gff}
meta2
hairpin
Hairpin file
*.{fa,fasta}
meta3
gtf
GTF file
*.{gtf}
species
:string
Species name of the GTF file
tsv
export/*_rawData.tsv
TSV file
*.{tsv}
fasta
export/*.fasta
FASTA file
*.{fasta,fa}
vcf
export/*.vcf*
VCF file
*.{vcf,vcf.gz}
versions_mirtop
${task.process}
The name of the process
mirtop
The name of the tool
mirtop --version 2>&1 | sed -n 's/^mirtop //p'
:eval
The expression to obtain the version of the tool
versions
Small RNA-seq annotation
