- InstallationInstall nf-core/tools
- TUIExplore commands graphically
Pipelines
- createScaffold new pipelines
- listList pipelines
- launchLaunch pipelines via TUI or GUI
- create params fileCreate parameter files
- downloadDownload pipelines and dependencies
- licencesPrint software licenses
- rocrateCreate RO-Crates
- lintLint pipelines
- schemaBuild schema files
- bump versionBump pipeline versions
- syncSync pipelines with template
- create logoCreate pipeline logos
Modules
Subworkflows
Test datasets
- listList test dataset files
- list branchesList test dataset branches
- searchSearch test dataset files