nf-core/configs: self-hosted-runner Configuration

To use, run the pipeline with -profile self-hosted-runner. This will download and launch the self-hosted-runner.config which has been pre-configured with a setup suitable for the self-hosted-runners (for now on AWS via terraform). The main aim of this profile is to fix the permission errors on self-hosted GitHub actions runners.

Config file

See config file on GitHub

conf/self_hosted_runner
// Config file for nf-core's self-hosted-runners


//Profile config names for nf-core/configs
params {
    config_profile_description = "Profile for nf-core's self-hosted runners provided by nf-core/configs."
    config_profile_contact     = 'Matthias Hörtenhuber (@mashehu)'
    config_profile_url         = 'https://github.com/nf-core/actions-runners'




    // General cpus/memory/time requirements
    // WARNING: This will be deprecated from the pipeline template in favour of resourceLimits
    // Keeping the parameters for backwards compatibility
    max_cpus                   = 2
    max_memory                 = 7.GB
    max_time                   = 72.h
}


process {
    resourceLimits = [
        memory: 7.GB,
        cpus: 2,
        time: 72.h
    ]
    resourceLimits = [
        cpus: 2,
        memory: '7.GB',
        time: '72.h'
    ]
}


docker {
    enabled      = true
    fixOwnership = true
    runOptions   = '--platform=linux/amd64'
}