nf-core/configs: ccga_dx
CCGA DX cluster profile.
nf-core/configs: CCGA DX Configuration
Deployment and testing of nf-core pipelines at the CCGA DX cluster is on-going.
To use, run the pipeline with -profile ccga_dx. This will download and launch the ccga_dx.config which has been pre-configured with a setup suitable for the CCGA cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline.
Before running the pipeline you will need to have Nextflow installed.
NB: Access to the CCGA DX cluster is restricted to IKMB/CCGA employes. Please talk to Marc Hoeppner to get access (@marchoeppner).
Config file
//Profile config names for nf-core/configsparams { config_profile_description = 'CCGA DX cluster profile provided by nf-core/configs.' config_profile_contact = 'Marc Hoeppner (@marchoeppner)' config_profile_url = 'https://www.ccga.uni-kiel.de/'}
/* * ------------------------------------------------- * Nextflow config file for CCGA cluster in Kiel * ------------------------------------------------- */
singularity { enabled = true runOptions = "-B /mnt -B /work_ifs"}
executor { queueSize = 100}
process { resourceLimits = [ memory: 250.GB, cpus: 20, time: 240.h ]
// Global process config executor = 'slurm' queue = 'htc'}
params { // illumina iGenomes reference file paths on DX Cluster igenomes_base = '/work_ifs/ikmb_repository/references/iGenomes/references/' saveReference = true max_memory = 250.GB max_cpus = 20 max_time = 240.h}